make-secnet-sites: In -u mode, output file "dereferences" include directives

Whenm make-secnet-sites is writing the "output" sites file in -u
(groupfile update) mode, it includes the effective contents of files
referenced in "include" directives, rather than the "include"
directive itself.

So the "output" sites file does not any longer depend on any files
included by the header.

Signed-off-by: Ian Jackson <ijackson@chiark.greenend.org.uk>